Results 21 - 40 of 146 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 147881 | 0.75 | 0.734049 |
Target: 5'- gGGCc---GGGGAGGGAGgCGGGGAGGa -3' miRNA: 3'- -CCGaagaUUUCUCUCUCgGCCUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 150814 | 0.75 | 0.734049 |
Target: 5'- gGGCcUCggGGAGGGAGAGa-GGAGGGGg -3' miRNA: 3'- -CCGaAGa-UUUCUCUCUCggCCUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 153892 | 0.75 | 0.734049 |
Target: 5'- gGGCcUCggGGAGGGAGAGa-GGAGGGGg -3' miRNA: 3'- -CCGaAGa-UUUCUCUCUCggCCUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 157115 | 0.75 | 0.734049 |
Target: 5'- gGGCc---GGGGAGGGAGgCGGGGAGGa -3' miRNA: 3'- -CCGaagaUUUCUCUCUCgGCCUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 156970 | 0.75 | 0.734049 |
Target: 5'- gGGCcUCggGGAGGGAGAGa-GGAGGGGg -3' miRNA: 3'- -CCGaAGa-UUUCUCUCUCggCCUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 33197 | 0.75 | 0.743983 |
Target: 5'- gGGCacccCcGGGGGGAG-GCCGGAGGGGg -3' miRNA: 3'- -CCGaa--GaUUUCUCUCuCGGCCUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 120207 | 0.75 | 0.753815 |
Target: 5'- cGGCcUCUAAcAGGGaAGuGCCGGAGGGa -3' miRNA: 3'- -CCGaAGAUU-UCUC-UCuCGGCCUCUCc -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 163198 | 0.75 | 0.753815 |
Target: 5'- uGGCUUCUGccccucAGAG-GAGCCGGGcAGGc -3' miRNA: 3'- -CCGAAGAUu-----UCUCuCUCGGCCUcUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 68612 | 0.75 | 0.773136 |
Target: 5'- uGGCagUUgagGAAGGGAGGGCUGGcGGGGa -3' miRNA: 3'- -CCGa-AGa--UUUCUCUCUCGGCCuCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 142995 | 0.74 | 0.782605 |
Target: 5'- aGGCagg-GAGGAGAGgaGGCCGGGGAGcGg -3' miRNA: 3'- -CCGaagaUUUCUCUC--UCGGCCUCUC-C- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 146073 | 0.74 | 0.782605 |
Target: 5'- aGGCagg-GAGGAGAGgaGGCCGGGGAGcGg -3' miRNA: 3'- -CCGaagaUUUCUCUC--UCGGCCUCUC-C- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 155307 | 0.74 | 0.782605 |
Target: 5'- aGGCagg-GAGGAGAGgaGGCCGGGGAGcGg -3' miRNA: 3'- -CCGaagaUUUCUCUC--UCGGCCUCUC-C- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 158386 | 0.74 | 0.782605 |
Target: 5'- aGGCagg-GAGGAGAGgaGGCCGGGGAGcGg -3' miRNA: 3'- -CCGaagaUUUCUCUC--UCGGCCUCUC-C- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 152229 | 0.74 | 0.782605 |
Target: 5'- aGGCagg-GAGGAGAGgaGGCCGGGGAGcGg -3' miRNA: 3'- -CCGaagaUUUCUCUC--UCGGCCUCUC-C- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 51155 | 0.74 | 0.782605 |
Target: 5'- cGCUguagCUGucGGAGugggcuguGGAGCCGGGGAGGc -3' miRNA: 3'- cCGAa---GAUu-UCUC--------UCUCGGCCUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 149151 | 0.74 | 0.782605 |
Target: 5'- aGGCagg-GAGGAGAGgaGGCCGGGGAGcGg -3' miRNA: 3'- -CCGaagaUUUCUCUC--UCGGCCUCUC-C- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 139217 | 0.74 | 0.813698 |
Target: 5'- aGGUUUCUAGGG-GuGAGCUgcuguggggcuuguuGGAGAGGa -3' miRNA: 3'- -CCGAAGAUUUCuCuCUCGG---------------CCUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 26167 | 0.73 | 0.85176 |
Target: 5'- gGGCUUaagcggcCUGGAGGGGauuaGGUCGGAGGGGg -3' miRNA: 3'- -CCGAA-------GAUUUCUCUc---UCGGCCUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 126023 | 0.73 | 0.85256 |
Target: 5'- gGGCUUCUGcuGcu-GGGCCGG-GAGGg -3' miRNA: 3'- -CCGAAGAUuuCucuCUCGGCCuCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 135328 | 0.72 | 0.867375 |
Target: 5'- uGGC-UCUGAGGGGAGGcacgggcGCCuaauuucuaGGAGGGGg -3' miRNA: 3'- -CCGaAGAUUUCUCUCU-------CGG---------CCUCUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home