miRNA display CGI


Results 41 - 60 of 401 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 190961 0.74 0.244481
Target:  5'- gGCGCCcGCCGCGGCGGccccuCCGGCGcCg -3'
miRNA:   3'- -UGCGGaUGGCGCCGCCcc---GGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 75560 0.74 0.244481
Target:  5'- -gGCUcGCCGgGGCGGGGCCGcCGcCg -3'
miRNA:   3'- ugCGGaUGGCgCCGCCCCGGCuGCuG- -5'
8949 3' -64.4 NC_002512.2 + 97162 0.74 0.249939
Target:  5'- uGCGCCUGCgGCaGC-GGGCCGAgGAUc -3'
miRNA:   3'- -UGCGGAUGgCGcCGcCCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 128188 0.74 0.261155
Target:  5'- uCGCCgagcggGCCGcCGGCGGGaCCGGgGACg -3'
miRNA:   3'- uGCGGa-----UGGC-GCCGCCCcGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 96304 0.74 0.261155
Target:  5'- cCGCC-GCCGCgGGCGGGccggucGCCGcACGACa -3'
miRNA:   3'- uGCGGaUGGCG-CCGCCC------CGGC-UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 113152 0.74 0.261155
Target:  5'- gGCGCCggccucGCCGCGGCcGGGCgGgacGCGACc -3'
miRNA:   3'- -UGCGGa-----UGGCGCCGcCCCGgC---UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 38930 0.73 0.266916
Target:  5'- -gGCC-GCCGCGGCGGGcGCCcGCGuGCg -3'
miRNA:   3'- ugCGGaUGGCGCCGCCC-CGGcUGC-UG- -5'
8949 3' -64.4 NC_002512.2 + 42578 0.73 0.266916
Target:  5'- gGCGCCgcgagGCgaGCGGCGGGGCgGACc-- -3'
miRNA:   3'- -UGCGGa----UGg-CGCCGCCCCGgCUGcug -5'
8949 3' -64.4 NC_002512.2 + 102152 0.73 0.266916
Target:  5'- -gGCCgcgACCGCGGCuGGGUCGuCGAUc -3'
miRNA:   3'- ugCGGa--UGGCGCCGcCCCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 228052 0.73 0.272778
Target:  5'- gACGCCcgcggacgGCUGCGGCGcGGGa-GACGACg -3'
miRNA:   3'- -UGCGGa-------UGGCGCCGC-CCCggCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 222405 0.73 0.272778
Target:  5'- aGCGCCgcgGCUuCGGCGGGGgCCGGCaGCc -3'
miRNA:   3'- -UGCGGa--UGGcGCCGCCCC-GGCUGcUG- -5'
8949 3' -64.4 NC_002512.2 + 227505 0.73 0.278744
Target:  5'- gACGCCgcgACC-CGGgGGGGagaguCCGGCGGCg -3'
miRNA:   3'- -UGCGGa--UGGcGCCgCCCC-----GGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 229540 0.73 0.278744
Target:  5'- aACGCCggggaGCCG-GGCGGGgcGCCGGCGGa -3'
miRNA:   3'- -UGCGGa----UGGCgCCGCCC--CGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 137 0.73 0.278744
Target:  5'- aACGCCggggaGCCG-GGCGGGgcGCCGGCGGa -3'
miRNA:   3'- -UGCGGa----UGGCgCCGCCC--CGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 39690 0.73 0.281159
Target:  5'- cGCGCCgccgaccuucugcaGCCGgGGCGagcggaucGGGUCGACGACg -3'
miRNA:   3'- -UGCGGa-------------UGGCgCCGC--------CCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 181580 0.73 0.284201
Target:  5'- cCGUCUGCgGCGGCaGGGGCgGcggguccGCGACg -3'
miRNA:   3'- uGCGGAUGgCGCCG-CCCCGgC-------UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 136177 0.73 0.284813
Target:  5'- cCGCCg--CGCGGCGGGGUCGcCGGg -3'
miRNA:   3'- uGCGGaugGCGCCGCCCCGGCuGCUg -5'
8949 3' -64.4 NC_002512.2 + 226687 0.73 0.284813
Target:  5'- aGCGCCgggccgucgcCCGCGGCGGcGUCGAgCGACg -3'
miRNA:   3'- -UGCGGau--------GGCGCCGCCcCGGCU-GCUG- -5'
8949 3' -64.4 NC_002512.2 + 126897 0.73 0.290986
Target:  5'- aGCGCCUcuucucUCGCGGCGGggggaggccgGGCUGGCGAUa -3'
miRNA:   3'- -UGCGGAu-----GGCGCCGCC----------CCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 108426 0.73 0.297263
Target:  5'- uGCGCCgcCCGgGGCcgGGGGCCGGgGGg -3'
miRNA:   3'- -UGCGGauGGCgCCG--CCCCGGCUgCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.