miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
5647	+	68102	89	19	-20.3	NP_044634		5' arm      3' arm
5679	+	85779	89	22.5	-20.4	NP_044640		5' arm      3' arm
5985	-	135666	86	21	-20.4	NP_044665		5' arm      3' arm
5903	-	80198	89	20	-20.5			5' arm      3' arm
5699	+	96717	90	20	-20.5	NP_044646		5' arm      3' arm
5562	+	19684	79	21	-20.5	NP_044609		5' arm      3' arm
5931	-	96868	89	21	-20.5	NP_044646		5' arm      3' arm
5818	-	24622	87	20.5	-20.6	NP_044611		5' arm      3' arm
5651	+	71117	90	20.5	-20.6	NP_044638		5' arm      3' arm
5984	-	135086	88	19.5	-20.6			5' arm      3' arm
5642	+	64662	85	20	-20.6	NP_044632		5' arm      3' arm
5936	-	101464	90	20	-20.6	NP_044649		5' arm      3' arm
5748	+	135905	89	19.5	-20.6	NP_044665		5' arm      3' arm
5916	-	84914	89	19.5	-20.6	NP_044640		5' arm      3' arm
5804	-	17824	88	20	-20.6	NP_044608		5' arm      3' arm
5998	-	144512	89	19.5	-20.6	NP_044673		5' arm      3' arm
5805	-	17918	81	20	-20.6	NP_044608		5' arm      3' arm
5796	-	13134	90	21.5	-20.6	NP_044606		5' arm      3' arm
5615	+	46173	89	21.5	-20.6	NP_044623		5' arm      3' arm
5545	+	10466	90	22.5	-20.7	NP_044603		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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